Causal discovery algorithms (PC, LiNGAM, and others) search for statistical patterns consistent with causal structures. They help brainstorm hypotheses when domain knowledge is thin.
Discovery output is not proof. Confounders, measurement error, and small samples can mislead. Treat discovered edges as proposals to validate with experts and follow-up experiments.
Best practice
- Combine data-driven graphs with subject-matter knowledge.
- Use discovery to suggest confounders and mediators, not as a black box oracle.
- Re-run effect estimation with explicit methods after narrowing the graph.